Publications

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COVID-19 dan Ketahanan Pangan

Dalam: Ragam Perspektif Dampak COVID-19

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Kimia Analitik Instrumentasi

Sebuah Pengantar dengan Aplikasinya dalam Analisis Pigmen Alami

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Carotenoid composition in buah merah (Pandanus conoideus Lam.), an indigenous red fruit of the Papua Islands

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Sulfur-containing carotenoids from a marine coral symbion Erythrobacter flavus strain KJ5

* = as Correspondence Author

 

BOOKS & BOOK CHAPTERS

  1. Murdiyarso, D., Tjoa, A., Brotosudarmo, T., Juliandi, B., Mumbunan, S., Supriatna, J., Muladno, Iskandar, D. (2021) COVID-19 dan Ketahanan Pangan. In: Ragam Perspektif Dampak COVID-19, Oey-Gardiner, M. and Amin Abdullah, M. (Eds.), Jakarta, Yayasan Pustaka Obor Indonesia, Print ISBN 978-623-321-081-2. LINK

  2. Brotosudarmo, T.H.P., Limantara, L., Heriyanto (2019) Kimia Analitik Instrumentasi – Sebuah Pengantar dengan Aplikasinya dalam Analisis Pigmen Alami, Jakarta, Penerbit Salemba Teknika, ISBN 978-979-9549-50-1. LINK

  3. Brotosudarmo, T.H.P., Limantara, L., Chandra, R.D., Heriyanto (2018) Chloroplast pigments: structure, function, assembly and characterisation. In: Plant Growth and Regulation – Alterations to Sustain Unfavorable Conditions, Diah Ratnadewi and Hamim (Eds.), IntechOpen, Print ISBN 978-1-78984-285-2, DOI: 10.5772/intechopen.75672. LINK

INTERNATIONAL JOURNALS

  1. Wibowo, A.A., Elim, P.E., Heriyanto, Prihastyanti, M.N.U., Yoewono, J.R., Shioi, Y., Limantara, L., Brotosudarmo, T.H.P. (2022). Effect of drying on the production of fucoxanthin isomers from brown seaweeds. Journal of Food Processing and Preservation, 00, e17057, LINK

  2. Brotosudarmo, T.H.P., Wittmann, B., Seki, S., Fujii, R., Köhler, J. (2022) Wavelength-Dependent Optical Response of Single Photosynthetic Antenna Complexes from Siphonous Green Alga Codium fragile, J. Phys. Chem. Lett., 13, 5226-5231, LINK 

  3. Prayitno, D.I., Dewi, E.N., Pringgenies, D., Brotosudarmo, T. H.P. (2022) Green ultrasound-assisted extraction of astaxanthin from fermented rebon shrimp (cincalok) using vegetable oils as solvents, OCL 29: 15, LINK

  4. Brotosudarmo, T.H.P., Wittmann, B., Seki, S., Fujii, R., Köhler, J. (2022) Preprocess dependence of optical properties of ensembles and single siphonaxanthin-containing major antenna from the marine green alga Codium fragile, Scientific Reports, 12, 8461, LINK

  5. Soetantijo, L. A., Lintang, H. O., Heriyanto, Handojo, M. A. P., Brotosudarmo, T.H.P. (2022) Optimization of Adsorption and Desorption Time in the Extraction of Volatile Compounds in Brewed Java Arabica Coffee Using the HS-SPME/GC-MS Technique, Jurnal Kimia Sains dan Aplikasi, 25 (2), 49-55. LINK

  6. Wibowo, A.A., Heriyanto, Shioi, Y., Limantara, L., Brotosudarmo, T.H.P. (2022) Simultaneous purification of fucoxanthin isomers from brown seaweeds by open-column and high-performance liquid chromatography, Journal of Chromatography B, 1193, 123166. LINK

  7. Brotosudarmo, T. H. P.*, Setiyono, E., Awai, K., Pringgenies, D. (2021). Marine bacterium Seonamhaeicola algicola strain CC1 as a potential source for the antioxidant carotenoid, zeaxanthin. ILMU KELAUTAN: Indonesian Journal of Marine Sciences, 26 (4), 215–224. LINK

  8. Indrawati, R., Zubaidah, E., Sutrisno, A., Limantara, L., & Brotosudarmo, T. H. P. (2021). The Remnant photosynthetic pigments in tea dregs: identification, composition, and potential use as antibacterial photosensitizer. Potravinarstvo Slovak Journal of Food Sciences, 15, 835–845. LINK

  9. Indrawati, R., Zubaidah, R., Sutrisno, A., Limantara, L., Yusuf, M.M., Brotosudarmo, T.H.P. (2021) Visible light-induced antibacterial activity of pigments extracted from dregs of green and black teas, Scientifica, 2021, 5524468. LINK

  10. Brotosudarmo, T.H.P.*, Limantara, L., Pringgenies, D. (2021) Recent exploration of bioactive pigments from marine bacteria, ScienceAsia, 47, 566-270. LINK

  11. Jodiawan, Chrisdiyanti, D.N, Vi'atin, N., Prihastyanti, M.N.U., Chandra, R.D., Heriyanto, Siswanti, C.A., Hapsari, L., Brotosudarmo, T.H.P.* (2021) Carotenoid analysis from commercial banana cultivar (Musa spp.) in Malang, East Java, Indonesia, Indonesian Journal of Chemistry, 21(3), 690-698. LINK

  12. Dwivany, F.M., Sukriandi, N., Meitha, K., Brotosudarmo, T.H.P. (2021) In silico characterization of the structure of genes and proteins related to β-carotene degradation in Musa acuminata ‘DHPahang’ and Musa balbisiana ‘Pisang Klutuk Wulung’., Tropical Agricultural Science, 44(2), 429-447. LINK

  13. Prilianti, K.R; Setiyono, E.; Kelana, O.H.; Brotosudarmo, T.H.P. (2021) Deep Chemometrics for Nondestructive Photosynthetic Pigments Prediction Using Leaf Reflectance Spectra, Information Processing in Agriculture, 8(1), 194-204. LINK

  14. Heriyanto, Gunawan, I.A., Fujii, R., Maoka, T., Shioi, Y., Kameubun, K.M.B., Limantara, L., Brotosudarmo, T.H.P.* (2021) Carotenoid composition in buah merah (Pandanus conoideus Lam.), an indigenous red fruit of the Papua Islands, Journal of Food Composition and Analysis, 96, 103722. LINK

  15. Brotosudarmo, T.H.P.*, Limantara, L., Setiyono, E., Heriyanto (2020) Structures of Astaxanthin and Their Consequences for Therapeutic Application, International Journal of Food Science, 2020, ID 2155682. LINK

  16. Chandra, R.D.; Siswanti, C.A.; Prihastyanti, M.N.U.; Heriyanto; Limantara, L.; Brotosudarmo, T.H.P.* (2020) Evaluating Provitamin A Carotenoids and Polar Metabolite Composition during the Ripening Stages of the Agung Semeru Banana (Musa paradisiaca L. AAB), International Journal of Food Sciences, 2020, ID 8503923. LINK

  17. Setiyono, E.; Adhiwibawa, A.S.; Indrawati, R.; Prihastyanti, M.N.U.; Shioi, Y.; Brotosudarmo, T.H.P.* (2020) An Indonesian marine bacterium, Pseudoalteromonas rubra, produces antimicrobial prodiginine pigments, ACS Omega, 5, 9, 4626-4635. LINK

  18. Setiyono, E., Heriyanto, Pringgenies, D., Kanesaki, Y., Awai, K., Brotosudarmo, T.P.B. * (2019) Sulfur-containing carotenoids from a marine coral symbiont Erythrobacter flavus strain KJ5, Marine Drugs, 17, 349. LINK

  19. Kanesaki, Y., Setiyono, E., Pringgenies, D., Moriuchi, R., Brotosudarmo, T.H.P., Awai, K. (2019) Complete genome sequence of the marine bacterium Erythrobacter flavus strain KJ5, Microbiology Resource Announcements, 8, e00140-19. LINK

  20. Indrawati, R., Kurniawan, J.M., Wibowo, A.A., Juliana, Gunawan, I.A., Heriyanto, Brotosudarmo, T.H.P. (2019) Integrated solvent-free extraction and encapsulation of lutein from marigold petals and its application, CyTA - Journal of Food, 17 (1), 121-127. LINK

  21. Brotosudarmo, T.H.P.*, Heriyanto, Shioi, Y., Indriatmoko, Adhiwibawa, M.A.S., Indrawati, R., Limantara, L. (2018) Composition of the main dominant pigments from potential two edible seaweeds, Philippine Journal of Science, 147(1), 47-55. LINK

  22. Juliadiningtyas, A.D., Pringgenies, D., Heriyanto, Salim, K.P., Radjasa, O.K., Shioi, Y., Limantara, L., Brotosudarmo, T.H.P.* (2018) Preliminary investigation of the carotenoid composition of Erythrobacter sp. Strain KJ5 by high-performance liquid chromatography and mass spectrometry, Philippine Journal of Science 147(1), 93-100. LINK

  23. Limantara, L., Indrawati, R., Wijaya, D.E., Sulistiawati, E., Suparto, I.H., Wijayanti, R.D.E., Brotosudarmo THP (2017) Hypocholesterolemic effect and pigments composition of herbal medicine containing higher and lower plants, International Journal of Pharmacy and Pharmaceutical Sciences, 9(11), 97-103. 

  24. Heriyanto, Juliadiningtyas, A.D, Shioi, Y., Limantara, L., Brotosudarmo, T.H.P.* (2017) Analysis of pigment composition of brown seaweeds collected from Panjang Island, Central Java, Indonesia, Philippine Journal of Science 146(3): 323-330. LINK

  25. Prihastyanti, M.N.U., Heriyanto, H. and Brotosudarmo, T.H.P.* (2016) Phototostability of purple bacterial light-harvesting complexes towards exposure of light illumination traced by pigment ratio, Jurnal Teknologi, 78(4-2). LINK

  26. Indrawati, R., Chomiuk, A., Indriatmoko, Adhiwibawa, M.A.S., Siahaan, D., Brotosudarmo, T.H.P. and Limantara, L. (2015) Stability of palm carotenes in an organic solvent and in a food emulsion system, International Journal of Food Properties, 18(11), 2539-2548. LINK

  27. Bujak, L., Olejnik, M., Brotosudarmo, T.H.P., Schmidt, M.K., Czechowski, N., Piatkowski, D., Aizpurua J., Cogdell, R.J., Heiss, W., Mackowski, S. (2014) Polarization control of metal-enhanced fluorescence in hybrid assemblies of photosynthetic complexes and gold nanorods, Physical Chemistry Chemical Physics, 16, 9015-9022. LINK

  28. Bucynska, D., Bujak, L., Loi, M.A., Brotosudarmo, T.H.P., Cogdell, R., Mackowski, S. (2012) Energy transfer from conjugated polymer to bacterial light-harvesting complex, Applied Physics Letters 101, 173707. LINK

  29. Krajnik, B., Czechowski, N., Ciszak, K., Piatkowski, D., Mackowski, S., Brotosudarmo, T.H.P., Scheer, H., Pichler, S. and Heiss, W. (2012) Plasmon-enhanced fluorescence in heterochlorophyllous peridinin-chlorophyll-protein photosynthetic complex, Optical Materials, 34(12), 2076-2079. LINK

  30. Luer, L., Moulisova, V., Henry, S., Polli, D., Brotosudarmo, T.H.P., Hoseinkani, S., Brida, D., Lanzani, G., Cerullo, G. and Cogdell, R.J. (2012) Tracking energy transfer between light harvesting complex 2 and 1 in photosynthetic membranes grown under high and low illumination, Proceedings of the National Academy of Sciences USA, 109(5), 1473-1478. LINK

  31. Czechowski, N., Nyga, P., Schmidt, M.K., Brotosudarmo, T.H.P., Scheer, H., Piatkowski, D. and Mackowski, S. (2012) Absorption Enhancement in Peridinin-Chlorophyll-Protein Light-Harvesting Complexes Coupled to Semicontinuous Silver Film, Plasmonics, 7(1), 115-121. LINK

  32. Helly de Fretes, AB. Susanto, Leenawaty Limantara, Budhi Prasetyo, Heriyanto and Tatas H. P. Brotosudarmo. (2012): Estimation on degradation products of crude pigment extracts from red, brown and green varieties of red alga Kappaphycus alvaewzii (Doty) Doty: Difference absorption spectra studies, Indonesian Journal of Marine Sciences, 17 (1), 31-38. 

  33. Bujak, L., Brotosudarmo, T.H.P., Czeckowski, N., Olejnik, M., Ciszak, K., Litvin, R., Cogdell, R.J., Heiss, W. And Mackowski, S. (2012) Spectral dependence of fluorescence enhancement in LH2-Au nanoparticle hybrid nanostructure, Acta Physica Polonica A, 122(2), 252-254. LINK

  34. Brotosudarmo, T.H.P., Collins, A.M., Gall, A., Roszak, A.W., Gardiner, A.T., Blankenship, R.E. and Cogdell, R.J. (2011) The light intensity under which cells are grown controls the type of peripheral light-harvesting complexes that are assembled in a purple photosynthetic bacterium, Biochemical Journal, 440, 51-61. LINK

  35. Bujak, L., Czechowski, N., Piatkowski, D., Litvin, R., Mackowski, S., Brotosudarmo, T.H.P., Cogdell, R.J., Pichler, S. and Heiss, W. (2011) Fluorescence enhancement of light-harvesting complex 2 from purple bacteria coupled to spherical gold nanoparticle, Applied Physics Letters, 99, 173701. LINK

  36. Brotosudarmo, T.H.P. and Cogdell, R.J. (2010): Study on the structural basis of peripheral light harvesting complexes (LH2) in purple non-sulphur photosynthetic bacteria, Indonesian Journal of Chemistry, 10(3), 401-408. LINK

  37. Cogdell, R.J., Brotosudarmo, T.H.P., Gardiner, A.T., Sanchez, P.M., Cronin, L. (2010) Artificial photosynthesis – solar fuels: current status and future prospects, Biofuels, 1(6), 861-876. LINK

  38. Moulisová, V., Luer, L., Hoseinkhani, S., Brotosudarmo, T.H.P., Collins, A.M., Lanzani, G., Blankenship, R.E. and Cogdell, R.J. (2009): Low light adaptation: Energy transfer processes in different types of light harvesting complexes from Rhodopseudomonas palustris, Biophysical Journal, 97, 3019-3028. LINK

  39. Brotosudarmo, T.H.P., Kunz, R., Böhm, P., Gardiner, A.T., Moulisová, V., Cogdell R.J. and Köhler, J. (2009): Single-molecule spectroscopy reveals that individual low-light LH2 complexes from Rhodopseudomonas palustris 2.1.6. have a heterogenous polypeptide composition, Biophysical Journal, 97, 1491-1500. LINK

  40. Cogdell, R.J., Gardiner, A.T., Brotosudarmo, T.H.P. and Hashimoto, H. (2008): A Comparative Look at the First Few Milliseconds of the Light Reactions of Photosynthesis, Photochemical & Photobiological Sciences, 7, 1150-1158. LINK

  41. Bujak, L., Piatkowski, D., Mackowski, S., Wörmke, S., Jung, C., Bräuchle, C., Agarwal, A., Kotov, N.A., Schulte, T., Hofmann, E., Brotosudarmo, T.H.P., Scheer, H., Govorov, A.O. and Hiller, R.G. (2009): Plasmon Enhancement of Fluorescence in Single Light-Harvesting Complexes from Amphidinium carterae, Acta Physica Polonica A, 116, S22-25. LINK

  42. Wörmke, S., Mackowski, S., Schalter, A., Brotosudarmo, T.H.P., Johanning, S., Scheer, H. and Bräuchle, C. (2008): Single Molecule Fluorescence of Native and Refolded Peridinin-Chlorophyll-Protein Complexes, Journal of Fluoresence, 18, 611-617. LINK

  43. Mackowski, S., Wörmke, S., Maier, A.J., Brotosudarmo, T.H.P., Harutyunyan, H., Hartschuh, A., Govorov, A.O., Scheer, H. and Bräuchle, C. (2008): Metal-Enhanced Fluorescence of Chlorophylls in Single Light-Harvesting Complexes, Nano Letters, 8(2), 558-646. LINK

  44. Brotosudarmo, T.H.P., Mackowski, S., Hofmann, E., Hiller, R.G., Bräuchle, C. and Scheer, H. (2008): Relative binding affinities of chlorophylls in peridinin-chlorophyll-protein reconstituted with heterochlorophyllous mixtures, Photosynthesis Research, 95(2-3), 247-52. LINK

  45. Mackowski, S., Wörmke, S., Brotosudarmo, T.H.P., Scheer, H. and Bräuchle, C. (2008): Fluorescence spectroscopy of reconstituted peridinin-chlorophyll-protein complexes, Photosynthesis Research, 95(2-3), 253-60. LINK

  46. Mackowski, S., Wörmke, S., Brotosudarmo, T.H.P., Jung, C., Hiller, R.G., Scheer, H. and Bräuchle, C. (2007): Energy transfer in reconstituted peridinin-chlorophyll-protein complexes: ensemble and single-molecule spectroscopy studies, Biophysical Journal, 93(9), 3249-58. LINK

  47. Wörmke, S., Mackowski, S., Brotosudarmo, T.H.P., Jung, C., Zumbusch, A., Ehrl, M., Scheer, H., Hofmann, E., Hiller, R.G. and Bräuchle, C. (2007): Monitoring fluorescence of individual chromophores in peridinin-chlorophyll-protein complex using single molecule spectroscopy, Biochimica et Biophysica Acta (BBA) – Bioenergetics, 1767, 956-964. LINK

  48. Wörmke, S., Makowski, S., Brotosudarmo, T.H.P., Bäuchle, C.H., Gracia, A., Braun, P., Scheer, H. and Hofmann, E. (2007): Detection of Single Biomolecule Fluorescence Excited through Energy Transfer: Application to Light-Harvesting Complexes, Applied Physics Letters, 90, 193901-3. LINK

  49. Brotosudarmo, T.H.P., Hofmann, E., Hiller, R.G., Wörmke, S., Mackowski, S., Zumbusch, A., Bräuchle, C. and Scheer, H. (2006): Peridinin-Chlorophyll-Protein Reconstituted with Chlorophyll Mixtures: Preparation, Bulk and Single Molecule Spectroscopy, FEBS Letters, 580, 5257–5262. LINK

CONFERENCE PROCEEDINGS

  1. Brotosudarmo, T.H.P.* (2021) Exploring bioactive pigments from marine bacterial isolate from the Indonesian seas, IOP Conf. Ser.: Earth Environ. Sci. 944 012016. LINK

  2. Adhiwibawa, M.A.S., Limantara, L., Brotosudarmo, T.H.P.* (2021) Rapid identification of urban green space using Planetscope satellite image and artificial intelligence, Journal of Physics: Conference Series, 1867, 012074. LINK

  3. Brotosudarmo, T.H.P.*, Wibowo, A.A., Heriyanto, Adhiwibawa, M.A.S. (2019) Single cells diatom Chaetoceros muelleri investigated by homebuilt confocal fluorescence spectro-microscopy, Proc. SPIE 11044, 110440E. LINK

  4. Adhiwibawa, M.A.S., Ariyanto, M.R., Struck, A., Prilianti, K.R., Brotosudarmo, T.H.P.* (2019) Convolutional neural network in image analysis for determination of mangrove species, Proc. SPIE 11044, 1104401. LINK

  5. Prilianti, K.R., Brotosudarmo, T.H.P., Anam, S., Suryanto, A. (2019) Performance comparison of the convolutional neural network optimizer for photosynthetic pigments prediction on plant digital image, AIP Conference Proceedings, 2084, 020020. LINK

  6. Prilianti, K.R., Hariyanto, S., Natali, F.D.D., Indriatmoko, Adhiwibawa, M.A.S., Limantara, L., Brotosudarmo, T.H.P* (2016) Artificial neural network model for photosynthetic pigments identification using multi wavelength chromatographic data, The American Institute of Physics Conference Proceedings, 1723, 030016. LINK

  7. Adhiwibawa, M.A.S., Setiawan, Y.E., Prilianti, K.R., Brotosudarmo, T.H.P.* (2015) Web camera as low cost multispectral sensor for quantification of chlorophyll in soybean leaves, Proceeding of SPIE9444, doi:10.1117/12.2080951. LINK

  8. Adhiwibawa, M.A.S., Setiawan, Y.E., Setiawan Y., Prilianti, K.R., Brotosudarmo, T.H.P.* (2015) Application of simple multispectral image sensor and artificial intelligence for predicting of drought tolerant variety of soybean, Procedia Chemistry, 14, 246-255

  9. Indriatmoko, Shioi, Y., Brotosudarmo, T.H.P., Limantara, L. (2015) Separation of photosynthetic pigments by high-performance liquid chromatography: comparison of column performance, mobile phase, and temperature, Procedia Chemistry, 14, 202-210

  10. Prilianti, K.R., Setiawan, Y., Indriatmoko, Adhiwibawa, M.A.S., Limantara, L., Brotosudarmo, T.H.P. (2014) Probabilistic classification method on multi wavelength chromatographic data for photosynthesis pigments identification, The American Institute of Physics Conference Proceedings, 1587, 78, doi: 10.1063/1.4866538

  11. Heriyanto, Michalik, M., Brotosudarmo, T.H.P.*, Limantara, L., Fiedor, L. (2014) Reconstitution approach to tune spectral features of light harvesting complexes for improved light absorption and energy transfer, Energy Procedia, 47, 113-122

  12. Brotosudarmo, T.H.P.*, Prihastyanti, M.N.U., Gardiner, A.T., Carey, A.M., Cogdell, R.J. (2014) The light reactions of photosynthesis as a paradigm for solar fuel production, Energy Procedia, 47, 283-289

  13. Prihastyanti, M.N.U., Indriatmoko, Brotosudarmo, T.H.P.* (2014) Photostability assay on light-harvesting complex as a material of biophotovoltaic, Energy Procedia, 47, 189-195

  14. Luer, L., Moulisova, V., Henry, S., Polli, D., Brotosudarmo, T.H.P., Hoseinkani, S., Brida, D., Lanzani, G., Cerullo, G. and Cogdell, R.J. (2013) Tracing the backward energy transfer from LH1 to LH2 in photosynthetic membranes grown under high and low irradiation, The European Physics Journal Web of Conferences, 41, 08011

PATENTS & COPYRIGHTS

  1. Pringgenies, D., Limantara, L., Sabdono, A., Radjasa, O.K., Brotosudarmo, T.H.P.: Application of Erytrobacter flavus for Coral Reef Conservation. Indonesian Patent Number: IDS000003820, Granted date: 27.04.2021. LINK

  2. Brotosudarmo, T.H.P., Adhiwibawa, M.A.S., Prilianti, K.R., Putra, E.H.E.: Method in wireless digital image acquisition for prediction of drought tolerant variant of soybean using fuzzy and artificial neural network algorithms. Indonesian Patent Number: IDP000067697, Granted date: 25.02.2020. LINK

  3. Brotosudarmo, T.H.P., Adhiwibawa, M.A.S., Prilianti, K.R., Putra, E.H.E. (2015) LCSPM – computer software for quantification of leaf chlorophyll, Indonesia Copyright No. C00201305715

  4. Brotosudarmo, T.H.P., Prilianti, K.R., Indriatmoko, Harianto, S. (2014): Sapta Chrom – computer software for identification and verification of photosynthetic pigments using a high-performance liquid chromatography, Indonesia Copyright No. C00201402839

  5. Brotosudarmo, T.H.P., Adhiwibawa, M.A.S., Prilianti, K.R. (2013): Mata Daun – mobile application software for measuring chlorophyll and nitrogen content in plant leaves using colour quantification through image digital processing, Indonesia Copyright No. C00201305715